| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 847 |
| Arabian Sea | Sea/Bay/Gulf | native | 847 |
| Central Indo-Pacific | sea/bay/gulf | native | |
| East African Coral Coast | Sea/Bay/Gulf | native | 847 |
| Eastern Coral Triangle | sea/bay/gulf | native | 75728 |
| Gulf of Aden | Sea/Bay/Gulf | native | 847 |
| Gulf of Oman | Sea/Bay/Gulf | native | 847 |
| Indian Ocean | Sea/Bay/Gulf | native | 847 |
| Indonesian Sea | Sea/Bay/Gulf | native | 847 |
| Leyte Gulf | Sea/Bay/Gulf | native | 847 |
| New Caledonia | Sea/Bay/Gulf | native | 99588 |
| Northern and Central Red Sea | Sea/Bay/Gulf | native | 847 |
| Pacific Ocean | Sea/Bay/Gulf | native | 847 |
| Palawan/North Borneo | Sea/Bay/Gulf | native | 847 |
| Persian Gulf | Sea/Bay/Gulf | native | 847 |
| Red Sea | Sea/Bay/Gulf | native | 847 |
| Red Sea and Gulf of Aden | sea/bay/gulf | native | 847 |
| Seychelles | Sea/Bay/Gulf | native | 847 |
| Solomon Sea | Sea/Bay/Gulf | native | 75728 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 847 |
| Somali/Arabian | sea/bay/gulf | native | 847 |
| South China Sea | Sea/Bay/Gulf | native | 847 |
| Southern Red Sea | Sea/Bay/Gulf | native | 847 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 847 |
| Sunda Shelf | sea/bay/gulf | native | 847 |
| Sunda Shelf/Java Sea | Sea/Bay/Gulf | native | 847 |
| Tropical Southwestern Pacific | sea/bay/gulf | native | 99588 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 847 |
| West Philippine Sea | Sea/Bay/Gulf | native | 847 |
| Western Coral Triangle | sea/bay/gulf | native | 847 |
| Western Indian Ocean | sea/bay/gulf | native | 847 |
| Western Indo-Pacific | sea/bay/gulf | native | 847 |