| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Bay of Bengal | Sea/Bay/Gulf | native | 1394 |
| Brahmaputra | River (basin) | native | 1394 |
| Central and Southern Great Barrier Reef | Sea/Bay/Gulf | native | 1522 |
| Central Indo-Pacific | sea/bay/gulf | native | 1522 |
| Eastern India | Sea/Bay/Gulf | native | 1394 |
| Ganges | River (basin) | native | 1522 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 1522 |
| Indian Ocean | Sea/Bay/Gulf | native | 1394 |
| Irrawaddy | River (basin) | native | 1522 |
| Lesser Sunda | Sea/Bay/Gulf | native | 1522 |
| Mekong | River (basin) | native | 1394 |
| Northern Bay of Bengal | Sea/Bay/Gulf | native | 1394 |
| Pacific Ocean | Sea/Bay/Gulf | native | 1394 |
| Palawan/North Borneo | Sea/Bay/Gulf | native | 94963 |
| South China Sea | Sea/Bay/Gulf | native | 1394 |
| Sulawesi Sea/Makassar Strait | Sea/Bay/Gulf | native | 1522 |
| Sunda Shelf | sea/bay/gulf | native | 1522 |
| Sunda Shelf/Java Sea | Sea/Bay/Gulf | native | 1522 |
| Temperate Northern Pacific | sea/bay/gulf | native | 8412 |
| Visayan Sea | Sea/Bay/Gulf | native | 94963 |
| West Philippine Sea | Sea/Bay/Gulf | native | 1394 |
| Western Coral Triangle | sea/bay/gulf | native | 1522 |
| Western Indo-Pacific | sea/bay/gulf | native | 1394 |