| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Bonaparte Coast | Sea/Bay/Gulf | native | 106854 |
| Davao Gulf | Sea/Bay/Gulf | native | 10 |
| Exmouth to Broome | Sea/Bay/Gulf | native | 106854 |
| Indian Ocean | Sea/Bay/Gulf | native | 8 |
| Manila Bay | Sea/Bay/Gulf | native | 10 |
| Pacific Ocean | Sea/Bay/Gulf | native | 8 |
| Panguil Bay | Sea/Bay/Gulf | native | 10 |
| Sahul Shelf | sea/bay/gulf | native | 75620 |
| Shark Bay | Sea/Bay/Gulf | native | 115986 |
| Sorsogon Bay | Sea/Bay/Gulf | native | 10 |
| Tayabas Bay | Sea/Bay/Gulf | native | 10 |