| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman Sea | Sea/Bay/Gulf | native | 847 |
| Arabian Sea | Sea/Bay/Gulf | native | 847 |
| Bay of Bengal | Sea/Bay/Gulf | native | 847 |
| Central Indian Ocean Islands | sea/bay/gulf | native | 89710 |
| Central Indo-Pacific | sea/bay/gulf | native | |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 847 |
| East Central Australian Shelf | Sea/Bay/Gulf | native | 847 |
| Eastern Coral Triangle | sea/bay/gulf | native | 89710 |
| Fiji Islands | Sea/Bay/Gulf | native | 89710 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 847 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 847 |
| Indian Ocean | Sea/Bay/Gulf | native | 847 |
| Indonesian Sea | Sea/Bay/Gulf | native | 847 |
| Maldives | Sea/Bay/Gulf | native | 847 |
| New Caledonia | Sea/Bay/Gulf | native | 89710 |
| North Australian Shelf | Sea/Bay/Gulf | native | 847 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 847 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 847 |
| Pacific Ocean | Sea/Bay/Gulf | native | 847 |
| Palawan/North Borneo | Sea/Bay/Gulf | native | 847 |
| Sahul Shelf | sea/bay/gulf | native | 847 |
| Solomon Archipelago | Sea/Bay/Gulf | native | 89710 |
| South China Sea | Sea/Bay/Gulf | native | 847 |
| South India and Sri Lanka | Sea/Bay/Gulf | native | 847 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 847 |
| Sunda Shelf | sea/bay/gulf | native | 847 |
| Sunda Shelf/Java Sea | Sea/Bay/Gulf | native | 847 |
| Temperate Australasia | sea/bay/gulf | native | 847 |
| Temperate Northern Pacific | sea/bay/gulf | native | 847 |
| Tropical Northwestern Pacific | sea/bay/gulf | native | 101074 |
| Tropical Southwestern Pacific | sea/bay/gulf | native | 89710 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |
| West and South Indian Shelf | sea/bay/gulf | native | 847 |
| West Caroline Islands | Sea/Bay/Gulf | native | 101074 |
| West Central Australian Shelf | Sea/Bay/Gulf | native | 847 |
| West Philippine Sea | Sea/Bay/Gulf | native | 847 |
| Western Coral Triangle | sea/bay/gulf | native | 847 |
| Western Indo-Pacific | sea/bay/gulf | native | 89710 |