| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman | sea/bay/gulf | native | 848 |
| Andaman Sea | Sea/Bay/Gulf | native | 848 |
| Arabian Sea | Sea/Bay/Gulf | native | 848 |
| Bay of Bengal | Sea/Bay/Gulf | native | 848 |
| Bight of Sofala/Swamp Coast | Sea/Bay/Gulf | native | 848 |
| Cargados Carajos/Tromelin Island | Sea/Bay/Gulf | native | 848 |
| Central Indian Ocean Islands | sea/bay/gulf | native | 848 |
| Central Indo-Pacific | sea/bay/gulf | native | 848 |
| Central Somali Coast | Sea/Bay/Gulf | native | 848 |
| Chagos | Sea/Bay/Gulf | native | 848 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 848 |
| East African Coral Coast | Sea/Bay/Gulf | native | 848 |
| Eastern Coral Triangle | sea/bay/gulf | native | 848 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 84399 |
| Indian Ocean | Sea/Bay/Gulf | native | 848 |
| Lesser Sunda | Sea/Bay/Gulf | native | 848 |
| Mascarene Islands | Sea/Bay/Gulf | native | 848 |
| New Caledonia | Sea/Bay/Gulf | native | 848 |
| North Australian Shelf | Sea/Bay/Gulf | native | 848 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 848 |
| Northern and Central Red Sea | Sea/Bay/Gulf | native | 848 |
| Northern Monsoon Current Coast | Sea/Bay/Gulf | native | 848 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 848 |
| Pacific Ocean | Sea/Bay/Gulf | native | 910 |
| Red Sea | Sea/Bay/Gulf | native | 848 |
| Red Sea and Gulf of Aden | sea/bay/gulf | native | 848 |
| Seychelles | Sea/Bay/Gulf | native | 848 |
| Solomon Archipelago | Sea/Bay/Gulf | native | 848 |
| South China Sea | Sea/Bay/Gulf | native | 8294 |
| South India and Sri Lanka | Sea/Bay/Gulf | native | 848 |
| Southeast Madagascar | Sea/Bay/Gulf | native | 848 |
| Southern Red Sea | Sea/Bay/Gulf | native | 848 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 848 |
| Sunda Shelf | sea/bay/gulf | native | 848 |
| Temperate Northern Pacific | sea/bay/gulf | native | 848 |
| Tropical Northwestern Pacific | sea/bay/gulf | native | 101074 |
| Tropical Southwestern Pacific | sea/bay/gulf | native | 848 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |
| Vanuatu | Sea/Bay/Gulf | native | 848 |
| Verde Island Passage | Sea/Bay/Gulf | native | 910 |
| West and South Indian Shelf | sea/bay/gulf | native | 848 |
| West Caroline Islands | Sea/Bay/Gulf | native | 101074 |
| West Philippine Sea | Sea/Bay/Gulf | native | 8294 |
| Western and Northern Madagascar | Sea/Bay/Gulf | native | 848 |
| Western Coral Triangle | sea/bay/gulf | native | 848 |
| Western Indian Ocean | sea/bay/gulf | native | 848 |
| Western Indo-Pacific | sea/bay/gulf | native | 848 |