| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Arnhem Coast to Gulf of Carpenteria | Sea/Bay/Gulf | native | 122522 |
| Bonaparte Coast | Sea/Bay/Gulf | native | 122522 |
| Central and Southern Great Barrier Reef | Sea/Bay/Gulf | native | 122522 |
| Central Indo-Pacific | sea/bay/gulf | native | 81020 |
| Exmouth to Broome | Sea/Bay/Gulf | native | 120175 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 81020 |
| Houtman | Sea/Bay/Gulf | native | 122522 |
| Indian Ocean | Sea/Bay/Gulf | native | 117225 |
| Manning-Hawkesbury | Sea/Bay/Gulf | native | 122522 |
| Ningaloo | Sea/Bay/Gulf | native | 117225 |
| Pacific Ocean | Sea/Bay/Gulf | native | 101589 |
| Shark Bay | Sea/Bay/Gulf | native | 115986 |
| South China Sea | Sea/Bay/Gulf | native | 81020 |
| Southern China | Sea/Bay/Gulf | native | 125532 |
| Sunda Shelf | sea/bay/gulf | native | 101589 |
| Torres Strait Northern Great Barrier Reef | Sea/Bay/Gulf | native | 122522 |
| Tweed-Moreton | Sea/Bay/Gulf | native | 122522 |