| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Banda Sea | Sea/Bay/Gulf | native | 846 |
| Central Indo-Pacific | sea/bay/gulf | native | |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 846 |
| Eastern Coral Triangle | sea/bay/gulf | native | 89710 |
| Indian Ocean | Sea/Bay/Gulf | native | 846 |
| Indonesian Sea | Sea/Bay/Gulf | native | 846 |
| Kuroshio Current | Sea/Bay/Gulf | native | 846 |
| Lesser Sunda | Sea/Bay/Gulf | native | 846 |
| Pacific Ocean | Sea/Bay/Gulf | native | 846 |
| Palawan/North Borneo | Sea/Bay/Gulf | native | 83555 |
| Solomon Archipelago | Sea/Bay/Gulf | native | 89710 |
| Solomon Sea | Sea/Bay/Gulf | native | 75728 |
| South China Sea | Sea/Bay/Gulf | native | 846 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 846 |
| Sunda Shelf | sea/bay/gulf | native | 83555 |
| Sunda Shelf/Java Sea | Sea/Bay/Gulf | native | 83555 |
| Temperate Northern Pacific | sea/bay/gulf | native | 89710 |
| Tropical Northwestern Pacific | sea/bay/gulf | native | 101074 |
| West Caroline Islands | Sea/Bay/Gulf | native | 101074 |
| West Philippine Sea | Sea/Bay/Gulf | native | 846 |
| Western Coral Triangle | sea/bay/gulf | native | 846 |