| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 846 |
| Andaman | sea/bay/gulf | native | 846 |
| Andaman Sea | Sea/Bay/Gulf | native | 846 |
| Arabian Sea | Sea/Bay/Gulf | native | 86439 |
| Arafura Sea | Sea/Bay/Gulf | native | 846 |
| Banda Sea | Sea/Bay/Gulf | native | 846 |
| Bay of Bengal | Sea/Bay/Gulf | native | 846 |
| Calamianes Islands | Sea/Bay/Gulf | native | 846 |
| Camotes Sea | Sea/Bay/Gulf | native | 846 |
| Cargados Carajos/Tromelin Island | Sea/Bay/Gulf | native | 846 |
| Central Indian Ocean Islands | sea/bay/gulf | native | 89710 |
| Central Indo-Pacific | sea/bay/gulf | native | 910 |
| Central Polynesia | sea/bay/gulf | native | 846 |
| Chagos | Sea/Bay/Gulf | native | 86439 |
| Cocos-Keeling/Christmas Island | Sea/Bay/Gulf | native | 846 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 86439 |
| East African Coral Coast | Sea/Bay/Gulf | native | 86439 |
| East Caroline Islands | Sea/Bay/Gulf | native | 846 |
| East China Sea | Sea/Bay/Gulf | native | 846 |
| Eastern Coral Triangle | sea/bay/gulf | native | 846 |
| Eastern Indo-Pacific | sea/bay/gulf | native | 846 |
| Eastern Philippines | Sea/Bay/Gulf | native | 910 |
| Exmouth to Broome | Sea/Bay/Gulf | native | 119055 |
| Fiji Islands | Sea/Bay/Gulf | native | 846 |
| Gilbert/Ellis Islands | Sea/Bay/Gulf | native | 846 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 86439 |
| Gulf of Aden | Sea/Bay/Gulf | native | 846 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 84399 |
| Indian Ocean | Sea/Bay/Gulf | native | 846 |
| Java Transitional | sea/bay/gulf | native | 846 |
| Kuroshio Current | Sea/Bay/Gulf | native | 846 |
| Lesser Sunda | Sea/Bay/Gulf | native | 846 |
| Line Islands | Sea/Bay/Gulf | native | 846 |
| Maldives | Sea/Bay/Gulf | native | 846 |
| Mariana Islands | Sea/Bay/Gulf | native | 101074 |
| Marshall Islands | Sea/Bay/Gulf | native | 846 |
| Marshall, Gilbert, and Ellis Islands | sea/bay/gulf | native | 846 |
| Milne Bay | Sea/Bay/Gulf | native | 75728 |
| New Caledonia | Sea/Bay/Gulf | native | 99588 |
| Northern and Central Red Sea | Sea/Bay/Gulf | native | 846 |
| Ogasawara Islands | Sea/Bay/Gulf | native | 846 |
| Pacific Ocean | Sea/Bay/Gulf | native | 846 |
| Palawan/North Borneo | Sea/Bay/Gulf | native | 121724 |
| Persian Gulf | Sea/Bay/Gulf | native | 86439 |
| Phoenix/Tokelau/Northern Cook Islands | Sea/Bay/Gulf | native | 846 |
| Polynesian Waters | Sea/Bay/Gulf | native | 846 |
| Red Sea | Sea/Bay/Gulf | native | 86439 |
| Red Sea and Gulf of Aden | sea/bay/gulf | native | 86439 |
| Sahul Shelf | sea/bay/gulf | native | 846 |
| Samoa Islands | Sea/Bay/Gulf | native | 86439 |
| Seychelles | Sea/Bay/Gulf | native | 846 |
| Society Islands | Sea/Bay/Gulf | native | 846 |
| Solomon Archipelago | Sea/Bay/Gulf | native | 846 |
| Solomon Sea | Sea/Bay/Gulf | native | 75728 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 846 |
| South China Sea | Sea/Bay/Gulf | native | 910 |
| South India and Sri Lanka | Sea/Bay/Gulf | native | 846 |
| Southeast Polynesia | sea/bay/gulf | native | 846 |
| Southern Cook/Austral Islands | Sea/Bay/Gulf | native | 846 |
| Southern Red Sea | Sea/Bay/Gulf | native | 846 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 86439 |
| Sunda Shelf | sea/bay/gulf | native | 846 |
| Sunda Shelf/Java Sea | Sea/Bay/Gulf | native | 846 |
| Tahiti I. | Sea/Bay/Gulf | native | 846 |
| Tasman Sea | Sea/Bay/Gulf | native | 846 |
| Temperate Australasia | sea/bay/gulf | native | 846 |
| Temperate Northern Pacific | sea/bay/gulf | native | 846 |
| Tonga Islands | Sea/Bay/Gulf | native | 846 |
| Tropical Northwestern Pacific | sea/bay/gulf | native | 846 |
| Tropical Southwestern Pacific | sea/bay/gulf | native | 846 |
| Tuamotus | Sea/Bay/Gulf | native | 846 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |
| Vanuatu | Sea/Bay/Gulf | native | 846 |
| Verde Island Passage | Sea/Bay/Gulf | native | 846 |
| West and South Indian Shelf | sea/bay/gulf | native | 846 |
| West Caroline Islands | Sea/Bay/Gulf | native | 103360 |
| West Philippine Sea | Sea/Bay/Gulf | native | 846 |
| Western Coral Triangle | sea/bay/gulf | native | 910 |
| Western Indian Ocean | sea/bay/gulf | native | 86439 |
| Western Indo-Pacific | sea/bay/gulf | native | 846 |